Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-140/megassr/results/hub_GCF_004744825.1/fasta/hub_GCF_004744825.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              173
Total size of examined sequences (bp):           4746203
Total number of identified SSRs:                 34
Number of SSR containing sequences:              26
Number of sequences containing more than 1 SSR:  7
Number of SSRs present in compound formation:    4


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	9
2	6
3	6
4	2
5	4
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-			1		1								1	1										1									5
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-					1					1													1									1	4
CG	-	-	-	3		1																																												4
GC	-	-	-	2																																														2
AGC	-	-	1																																															1
CCG	-	-	1																																															1
CGG	-	-	1	1																																														2
CTG	-	-				1																																												1
GCG	-	-	1																																															1
GCCA	-	1																																																1
TAAA	-	1																																																1
CCCCG	1																																																	1
CGCCC	1																																																	1
CGCGC	1																																																	1
GGCGC	1																																																	1
CAGCGC	1																																																	1
CGACTT	1																																																	1
CGCCAG	1																																																	1
CGCCGG	1																																																	1
GCCAGC	1																																																	1
TCAATC		1																																																1
TGGTCG				1																																														1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-			1		2					1			1	1									1	1								1	9
CG/CG	-	-	-	5		1																																												6
AGC/CTG	-	-	1			1																																												2
CCG/CGG	-	-	3	1																																														4
AAAT/ATTT	-	1																																																1
AGCC/CTGG	-	1																																																1
CCCCG/CGGGG	2																																																	2
CCGCG/CGCGG	2																																																	2
AAGTCG/ACTTCG	1																																																	1
AATCTC/AGATTG		1																																																1
ACCACG/CGTGGT				1																																														1
AGCGCC/CGCTGG	3																																																	3
CCGGCG/CCGGCG	1																																																	1
