Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-138/megassr/results/hub_GCF_004744785.1/fasta/hub_GCF_004744785.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              132
Total size of examined sequences (bp):           4748676
Total number of identified SSRs:                 24
Number of SSR containing sequences:              19
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	7
3	9
5	2
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	total
CG	-	-	-	4		1			5
GC	-	-	-	2					2
CCG	-	-	2						2
CGG	-	-	2						2
GCG	-	-	2						2
GCT	-	-	1						1
GGT	-	-			1				1
TGG	-	-	1						1
GCGCC	1								1
GCGCG	1								1
ATGGTC								1	1
CGCCAG	1	1							2
GAAGTC	1								1
GCCAGC	1								1
TCTTCC	1								1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	total
CG/CG	-	-	-	6		1			7
ACC/GGT	-	-	1		1				2
AGC/CTG	-	-	1						1
CCG/CGG	-	-	6						6
CCGCG/CGCGG	2								2
AAGAGG/CCTCTT	1								1
AAGTCG/ACTTCG	1								1
ACCATG/ATGGTC								1	1
AGCGCC/CGCTGG	2	1							3
