Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-136/megassr/results/hub_GCF_004744755.1/fasta/hub_GCF_004744755.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              92
Total size of examined sequences (bp):           4791399
Total number of identified SSRs:                 25
Number of SSR containing sequences:              19
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	7
3	8
5	3
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	total
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-				1	1
CG	-	-	-	5		1																6
GC	-	-	-	1																		1
CCG	-	-	2																			2
CGC	-	-	1																			1
CGG	-	-	2																			2
GCG	-	-	1																			1
GCT	-	-	1																			1
TGG	-	-	1																			1
CCGCG	1																					1
CGCGC	1																					1
GGCGC	1																					1
ATGGTC								1														1
CGACTT	1																					1
CTGGCG	1																					1
GCCAGC	1																					1
TCTTCC	1																					1
TGGCGC		1																				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-				1	1
CG/CG	-	-	-	6		1																7
ACC/GGT	-	-	1																			1
AGC/CTG	-	-	1																			1
CCG/CGG	-	-	6																			6
CCGCG/CGCGG	3																					3
AAGAGG/CCTCTT	1																					1
AAGTCG/ACTTCG	1																					1
ACCATG/ATGGTC								1														1
AGCGCC/CGCTGG	2	1																				3
