Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-45/megassr/results/hub_GCF_003994755.1/fasta/hub_GCF_003994755.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           4682141
Total number of identified SSRs:                 25
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	7
3	7
4	1
5	2
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
CG	-	-	-	3		1				4
GC	-	-	-	2						2
TA	-	-	-	1						1
CCG	-	-	1							1
CGG	-	-	1							1
GCA	-	-						1		1
GCC	-	-	1							1
GCG	-	-	1							1
GCT	-	-	2							2
GCCA	-	1								1
GCGCC	1									1
GCGCG	1									1
AAATAC		1								1
ACCGAG		1								1
CGGCTT	1									1
CTGGCG	1									1
GAAGTC	1									1
GCCAGC	1									1
TAAAAA	1									1
TGGTCG									1	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
AT/AT	-	-	-	1						1
CG/CG	-	-	-	5		1				6
AGC/CTG	-	-	2					1		3
CCG/CGG	-	-	4							4
AGCC/CTGG	-	1								1
CCGCG/CGCGG	2									2
AAAAAT/ATTTTT	1									1
AAATAC/ATTTGT		1								1
AAGCCG/CGGCTT	1									1
AAGTCG/ACTTCG	1									1
ACCACG/CGTGGT									1	1
ACCGAG/CGGTCT		1								1
AGCGCC/CGCTGG	2									2
