Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-44/megassr/results/hub_GCF_003994655.1/fasta/hub_GCF_003994655.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              2
Total size of examined sequences (bp):           4860161
Total number of identified SSRs:                 25
Number of SSR containing sequences:              2
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	7
4	2
5	3
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	total
CG	-	-	-	2												2
GC	-	-	-	3												3
CCG	-	-	1													1
CGG	-	-	1													1
CTG	-	-	1													1
GCC	-	-	1													1
GCG	-	-	2													2
GCT	-	-	1													1
GCCA	-	1														1
TATT	-	1														1
CGCTG	1															1
GCGCC	1															1
GCGCG	1															1
ACCGAG		1														1
CTGGCG	1															1
GAACAG															1	1
GAAGTC	1															1
GCCAGC	1															1
GCGGAG	1															1
TGGTCG									1							1
TTGCCC					1											1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	total
CG/CG	-	-	-	5												5
AGC/CTG	-	-	2													2
CCG/CGG	-	-	5													5
AAAT/ATTT	-	1														1
AGCC/CTGG	-	1														1
AGCGC/CGCTG	1															1
CCGCG/CGCGG	2															2
AACAGG/CCTGTT															1	1
AAGGGC/CCCTTG					1											1
AAGTCG/ACTTCG	1															1
ACCACG/CGTGGT									1							1
ACCGAG/CGGTCT		1														1
AGCGCC/CGCTGG	2															2
AGGCGG/CCGCCT	1															1
