Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-84/megassr/results/hub_GCF_003994635.1/fasta/hub_GCF_003994635.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           4860626
Total number of identified SSRs:                 35
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	7
3	12
4	1
5	4
6	11

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	total
CG	-	-	-	4		1		5
GC	-	-	-	2				2
CCA	-	-	1					1
CCG	-	-	2					2
CGC	-	-	2					2
CGG	-	-	1					1
GCA	-	-	1					1
GCG	-	-	2					2
GCT	-	-	2					2
GGC	-	-	1					1
GCCA	-	1						1
CCGCG	1							1
CGCGC	1							1
GCGCC	1							1
GCGGC	1							1
CGACGG	1							1
CTGGCG	1							1
GAAGTC	1							1
GCCAGC	1							1
GCTCCG		1						1
GCTGCC	2							2
GGAGGT	1							1
GGCGGT	1							1
TGGTCG							1	1
TGGTTG		1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	total
CG/CG	-	-	-	6		1		7
ACC/GGT	-	-	1					1
AGC/CTG	-	-	3					3
CCG/CGG	-	-	8					8
AGCC/CTGG	-	1						1
CCGCG/CGCGG	4							4
AACCAC/GGTTGT		1						1
AAGTCG/ACTTCG	1							1
ACCACG/CGTGGT							1	1
ACCGCC/CGGTGG	1							1
ACCTCC/AGGTGG	1							1
ACGGCG/CCGTCG	1							1
AGCCGG/CCGGCT		1						1
AGCGCC/CGCTGG	2							2
AGCGGC/CCGCTG	2							2
