Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-42/megassr/results/hub_GCF_003994615.1/fasta/hub_GCF_003994615.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           4643828
Total number of identified SSRs:                 21
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	7
3	4
4	2
5	2
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	total
CG	-	-	-	3					3
GC	-	-	-	4					4
CCG	-	-	1						1
CGG	-	-	1						1
GCC	-	-	1						1
GCG	-	-	1						1
GCCA	-	1							1
TATT	-	1							1
GCGCC	1								1
GCGCG	1								1
CTGGCG	1								1
GAAGTC	1								1
GCCAGC	2								2
GTGGCA	1								1
TGGTCG								1	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	total
CG/CG	-	-	-	7					7
CCG/CGG	-	-	4						4
AAAT/ATTT	-	1							1
AGCC/CTGG	-	1							1
CCGCG/CGCGG	2								2
AAGTCG/ACTTCG	1								1
ACCACG/CGTGGT								1	1
ACTGCC/AGTGGC	1								1
AGCGCC/CGCTGG	3								3
