Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-148/megassr/results/hub_GCF_003859675.1/fasta/hub_GCF_003859675.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              90
Total size of examined sequences (bp):           2093182
Total number of identified SSRs:                 13
Number of SSR containing sequences:              13
Number of sequences containing more than 1 SSR:  0
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	2
4	2
5	3
6	3

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
AT	-	-	-	2	2
CT	-	-	-	1	1
AGA	-	-	1		1
TAT	-	-	1		1
GTCA	-	2			2
AAAAC	1				1
GTAAA	1				1
TTTAA	1				1
AAAAAT	1				1
GAAAAA	1				1
TTCTGC	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AG/CT	-	-	-	1	1
AT/AT	-	-	-	2	2
AAG/CTT	-	-	1		1
AAT/ATT	-	-	1		1
ACTG/AGTC	-	2			2
AAAAC/GTTTT	1				1
AAAGT/ACTTT	1				1
AAATT/AATTT	1				1
AAAAAG/CTTTTT	1				1
AAAAAT/ATTTTT	1				1
AAGCAG/CTGCTT	1				1
