Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-43/megassr/results/hub_GCF_003855455.1/fasta/hub_GCF_003855455.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           737591
Total number of identified SSRs:                 12
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	3
5	5
6	1

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
AT	-	-	-	2	1	3
ATT	-	-	1			1
GGT	-	-	1			1
TTA	-	-			1	1
AATAA		1				1
TAAAA	2					2
TATTT	1					1
TTTTA	1					1
GCAGCT	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
AT/AT	-	-	-	2	1	3
AAT/ATT	-	-	1		1	2
ACC/GGT	-	-	1			1
AAAAT/ATTTT	4	1				5
AGCTGC/AGCTGC	1					1
