Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-34/megassr/results/hub_GCF_003851365.1/fasta/hub_GCF_003851365.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           7203062
Total number of identified SSRs:                 29
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	1
5	6
6	20

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	total
CG	-	-	-	1				1
GC	-	-	-	1				1
GCG	-	-	1					1
AGGCA	1							1
CCCCG	1							1
CGAGC	1							1
CGGCG	1							1
GCGGC	1							1
GGCGT	1							1
AAAGCC		3						3
AGCCCG	1							1
AGGCCG	1							1
CCACAT			1					1
CCAGGC	1							1
CCCAAG	1							1
CGCTGC	1							1
CTTGGC	1							1
GACAGG					1			1
GAGCTG	1							1
GCCGAA	1							1
GCTCCA						1		1
GCTGCG	1							1
GCTTTG				1				1
GGAAGA	1							1
GGCCTG		1						1
GGCTTT							1	1
TGATCT				1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	total
CG/CG	-	-	-	2				2
CCG/CGG	-	-	1					1
AAGGC/CCTTG	1							1
ACGCC/CGTGG	1							1
AGCCG/CGGCT	1							1
CCCCG/CGGGG	1							1
CCGCG/CGCGG	2							2
AAAGCC/CTTTGG		3		1			1	5
AAGAGG/CCTCTT	1							1
AAGATC/ATCTTG				1				1
AAGCCC/CTTGGG	1							1
AAGCCG/CGGCTT	1							1
AAGGCC/CCTTGG	1							1
ACAGGG/CCCTGT					1			1
ACATCC/ATGTGG			1					1
AGCCCG/CGGGCT	1							1
AGCCGC/CGGCTG	1							1
AGCGGC/CCGCTG	1							1
AGCTCC/AGCTGG	1					1		2
AGGCCC/CCTGGG	1	1						2
AGGCCG/CCTCGG	1							1
