Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-41/megassr/results/hub_GCF_003850565.1/fasta/hub_GCF_003850565.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           6896611
Total number of identified SSRs:                 51
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	2
5	8
6	38

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
AG	-	-	-		1								1
CG	-	-	-	2									2
GTG	-	-					1						1
GTT	-	-							1				1
CCTGG	1												1
CGGCG	1												1
CTGGC	2												2
CTTGC	1												1
GCCGC	1												1
TCAGC	1												1
TGGGA			1										1
AAAGCC	1												1
AGATCA	1												1
AGCCAG		1											1
AGGGCC	1												1
CACGAT		1											1
CCAGCG	1												1
CCGCAA							1						1
CCTGAC		1											1
CCTGCA	1												1
CCTGGC	1												1
CCTGGT	1												1
GCACCT							1						1
GCCAAA		1											1
GCCAGA			1										1
GCCAGG	1												1
GCCTGA	1												1
GCCTGG	1												1
GCTCCA		1											1
GCTCCT												1	1
GGCCAG	1												1
GGCCAT	1												1
GGCCCA	1												1
GGCCTG	1												1
GGCGGT	1												1
GGCTTG	1												1
GGGCAA	1												1
GGGTTG	1												1
GGTGCC					1								1
GGTGGC	1												1
GTCGAG		1											1
TCAGCC	1												1
TCCTGG	1												1
TCGGCA	1												1
TGGCCC	1												1
TGGCTC				1									1
TGGCTT				1									1
TTCCAC	1												1
TTTGGC										1			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
AG/CT	-	-	-		1								1
CG/CG	-	-	-	2									2
AAC/GTT	-	-							1				1
ACC/GGT	-	-					1						1
AAGGC/CCTTG	1												1
AGCTC/AGCTG	1												1
AGGCC/CCTGG	3												3
ATCCC/ATGGG			1										1
CCGCG/CGCGG	2												2
AAAGCC/CTTTGG	1	1		1						1			4
AACCCC/GGGGTT	1												1
AACCGC/CGGTTG							1						1
AAGATC/ATCTTG	1												1
AAGCCC/CTTGGG	1												1
AAGGGC/CCCTTG	1												1
AAGTGG/ACTTCC	1												1
ACCAGG/CCTGGT	2												2
ACCCTG/AGGGTC		1											1
ACCGCC/CGGTGG	2												2
ACCGGC/CCGGTG					1								1
ACCTCG/AGGTCG		1											1
ACCTGC/AGGTGC	1						1						2
ACGATC/ATCGTG		1											1
AGAGCC/CTCTGG		1	1	1									3
AGCAGG/CCTGCT												1	1
AGCCTC/AGGCTG	1												1
AGCCTG/AGGCTC	1												1
AGCGCC/CGCTGG	1												1
AGCTCC/AGCTGG		1											1
AGGCCC/CCTGGG	3												3
AGGGCC/CCCTGG	5												5
ATCGGC/ATGCCG	1												1
ATGGCC/ATGGCC	1												1
