Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-70/megassr/results/hub_GCF_003850545.1/fasta/hub_GCF_003850545.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           6796817
Total number of identified SSRs:                 45
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
3	2
4	1
5	12
6	30

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	total
ACC	-	-										1				1
CAC	-	-	1													1
AGCC	-			1												1
AGCCC	1															1
CCAGG	1															1
CCGGT	1															1
CCTGC	1															1
CGGCG	2															2
GCGCG	1															1
GCGGC	1															1
GCGTG	1															1
GGCCA	1															1
GGCGG	1															1
GGGCT	1															1
AAAGCC				1												1
CACCAG	1															1
CACCGC	1															1
CAGGAG															1	1
CCAATC	1															1
CCAGGC	2															2
CCGGTG								1								1
CCTGCA					1											1
CCTGGC	1															1
CCTGGG	1															1
CGCCAC	1															1
CTTGGC			1													1
GACCAA	1															1
GACCTG	1															1
GAGATC	1															1
GCCAGG	1															1
GCTCCA	1															1
GCTGCC	1															1
GGCCCA	1															1
GGGCAA	1															1
GGGCCA	1															1
GGGCCT	2															2
GGTGCG	1															1
GGTTGC	1															1
GTGATC						1										1
TATCTG	1															1
TCCACC	1															1
TTTGGC							1									1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	total
ACC/GGT	-	-	1									1				2
AGCC/CTGG	-			1												1
ACCGG/CCGGT	1															1
ACGCC/CGTGG	1															1
AGCCC/CTGGG	2															2
AGGCC/CCTGG	2															2
AGGGC/CCCTG	1															1
CCCCG/CGGGG	1															1
CCGCG/CGCGG	4															4
AAAGCC/CTTTGG				1			1									2
AACCGC/CGGTTG	1															1
AAGACC/CTTGGT	1															1
AAGGCC/CCTTGG			1													1
AAGGGC/CCCTTG	1															1
AATCCC/ATTGGG	1															1
ACAGAT/ATCTGT	1															1
ACCAGC/CTGGTG	1															1
ACCCGC/CGGGTG	1															1
ACCGCC/CGGTGG	2															2
ACCGGC/CCGGTG								1								1
ACCTCC/AGGTGG	1															1
ACCTGC/AGGTGC					1											1
ACCTGG/AGGTCC	1															1
ACGATC/ATCGTG						1										1
AGATCG/ATCTCG	1															1
AGCAGG/CCTGCT															1	1
AGCGGC/CCGCTG	1															1
AGCTCC/AGCTGG	1															1
AGGCCC/CCTGGG	6															6
AGGGCC/CCCTGG	3															3
