Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-39/megassr/results/hub_GCF_003702785.1/fasta/hub_GCF_003702785.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              214
Total size of examined sequences (bp):           5994879
Total number of identified SSRs:                 25
Number of SSR containing sequences:              20
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	3
4	1
5	6
6	13

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
AC	-	-	-				1				1
GC	-	-	-	1							1
AGC	-	-	1								1
CAT	-	-	1								1
CCA	-	-	1								1
GCCA	-									1	1
CGCGG	1										1
GCCCA	1										1
GCGTG	1										1
GGGCC	1										1
TGCCG	1										1
TGTGC	1										1
AGGTGT		1									1
CAACGC	1										1
CAGGAA			1								1
CATGAG		1									1
CCTGCA			1								1
CGATCT	1										1
CGGTTC	1										1
CTCGCT	1										1
GCGGCT	1										1
GGCTCA		1									1
GTTGCC	1										1
TCAGGC	1										1
TCAGGG	1										1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
AC/GT	-	-	-				1				1
CG/CG	-	-	-	1							1
ACC/GGT	-	-	1								1
AGC/CTG	-	-	1								1
ATC/ATG	-	-	1								1
AGCC/CTGG	-									1	1
ACAGC/CTGTG	1										1
ACGCC/CGTGG	1										1
ACGGC/CCGTG	1										1
AGCCC/CTGGG	1										1
CCCGG/CCGGG	1										1
CCGCG/CGCGG	1										1
AACAGG/CCTGTT			1								1
AACCGG/CCGGTT	1										1
AACGCC/CGTTGG	1										1
AACGGC/CCGTTG	1										1
ACACCT/AGGTGT		1									1
ACCCTG/AGGGTC	1										1
ACCTGC/AGGTGC			1								1
AGAGCG/CGCTCT	1										1
AGATCG/ATCTCG	1										1
AGCATG/ATGCTC		1									1
AGCCGC/CGGCTG	1										1
AGCCTG/AGGCTC	1	1									2
