Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-42/megassr/results/hub_GCF_003701545.1/fasta/hub_GCF_003701545.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              265
Total size of examined sequences (bp):           6014184
Total number of identified SSRs:                 44
Number of SSR containing sequences:              30
Number of sequences containing more than 1 SSR:  8
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	10
3	4
5	8
6	22

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
AC	-	-	-		1		1
CG	-	-	-	2			2
GC	-	-	-	5			5
GT	-	-	-	1	1		2
GCG	-	-	1				1
GGT	-	-				1	1
GTA	-	-		1			1
TCC	-	-		1			1
AAACC	1						1
ACAAA	1						1
AGAGA			1				1
CCCGA	1						1
CGCCA			1				1
CGGCG	1						1
GCCTC	1						1
TCACA		1					1
ACCGAT	1						1
AGCAAT	1						1
CAGCCC	1						1
CAGCTA	1						1
CAGGAA		1					1
CCAGAA			1				1
CCCAAG	1						1
CGGTAT		1					1
CGGTGT	1						1
GAGCTT	1						1
GATCCA				1			1
GCAGGT	1						1
GCCAGC	1						1
GCCTGA	1						1
GCGATG	1						1
GCGCTG		1					1
GCTCAA	1						1
GCTCTT	1						1
GCTGGC	1						1
GGCTGG	1						1
GGGCAC		1					1
GTGCAG	1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
AC/GT	-	-	-	1	2		3
CG/CG	-	-	-	7			7
ACC/GGT	-	-				1	1
ACT/AGT	-	-		1			1
AGG/CCT	-	-		1			1
CCG/CGG	-	-	1				1
AAAAC/GTTTT	1						1
AAACC/GGTTT	1						1
AAGAG/CTCTT			1				1
ACATC/ATGTG		1					1
ACCCG/CGGGT	1						1
ACGCC/CGTGG			1				1
AGGCG/CCTCG	1						1
CCGCG/CGCGG	1						1
AACAGG/CCTGTT		1					1
AACCAG/CTGGTT			1				1
AAGAGC/CTCTTG	1						1
AAGCCC/CTTGGG	1						1
AAGCTC/AGCTTG	2						2
AATAGC/ATTGCT	1						1
ACACCG/CGGTGT	1						1
ACAGCT/AGCTGT	1						1
ACCGAT/ATCGGT	1	1					2
ACCTGC/AGGTGC	2						2
ACGGGC/CCCGTG		1					1
AGATCC/ATCTGG				1			1
AGCCCC/CTGGGG	2						2
AGCCTG/AGGCTC	1						1
AGCGCC/CGCTGG	2	1					3
ATCGCC/ATGGCG	1						1
