Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-38/megassr/results/hub_GCF_003701515.1/fasta/hub_GCF_003701515.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              308
Total size of examined sequences (bp):           5808331
Total number of identified SSRs:                 37
Number of SSR containing sequences:              31
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	2
3	2
4	2
5	6
6	24

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	total
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1
CG	-	-	-	2															2
ATG	-	-				1													1
CAC	-	-	1																1
TGGC	-	1																	1
TTGG	-		1																1
ATTCA	1																		1
CAGGC	1																		1
CGCGG	1																		1
GCGCA	1																		1
GGCGC	1																		1
TGGCG	1																		1
ACCTGC	1																		1
ACGGCA		1																	1
AGCAGG					1														1
ATGAGG		1																	1
CAGGGG	1																		1
CCAGAA	1																		1
CGGTGC	1																		1
CTGCAC				1															1
GAACCG	1																		1
GCCAAA	1																		1
GCCAAG	1																		1
GCTCGG	1																		1
GGCCTC	1																		1
GGCGGT	2																		2
GGCGTA	1																		1
GGCTTG	1																		1
GGTGCA	2																		2
TCGTGC	1																		1
TGCAGG		1																	1
TGCGGT	1																		1
TGGCGC	1																		1
TGGTGT		1																	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1
CG/CG	-	-	-	2															2
ACC/GGT	-	-	1																1
ATC/ATG	-	-				1													1
AACC/GGTT	-		1																1
AGCC/CTGG	-	1																	1
AATTC/AATTG	1																		1
ACGCC/CGTGG	1																		1
AGCGC/CGCTG	1																		1
AGGCC/CCTGG	1																		1
CCGCG/CGCGG	2																		2
AAAGCC/CTTTGG	1																		1
AACACC/GGTGTT		1																	1
AACCAG/CTGGTT	1																		1
AACCGC/CGGTTG	1																		1
AACCGG/CCGGTT	1																		1
AACGGC/CCGTTG		1																	1
AAGCCC/CTTGGG	1																		1
AAGGCC/CCTTGG	1																		1
ACCGCC/CGGTGG	2																		2
ACCGGC/CCGGTG	1																		1
ACCTGC/AGGTGC	3	1		1															5
ACGAGC/CGTGCT	1																		1
ACGCCT/AGGCGT	1																		1
AGCAGG/CCTGCT					1														1
AGCCCG/CGGGCT	1																		1
AGCGCC/CGCTGG	1																		1
AGGATG/ATCCTC		1																	1
AGGCCG/CCTCGG	1																		1
AGGGGC/CCCCTG	1																		1
