Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-33/megassr/results/hub_GCF_003700505.1/fasta/hub_GCF_003700505.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              115
Total size of examined sequences (bp):           6097545
Total number of identified SSRs:                 23
Number of SSR containing sequences:              18
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
4	3
5	5
6	15

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	total
AGCC	-	1						1
CCAA	-						1	1
CTTC	-	1						1
CCATC	1							1
CGCGG	1							1
GCGGC	1							1
GGCAG	1							1
GGCGC	1							1
ACCTGC			1					1
CAGCCA	1							1
CAGGTC	1							1
CCGACA	1							1
CCTGCG	1							1
GATCAA		1						1
GCAGGT	1							1
GCCAAG	1							1
GGCGCA	1							1
GGTGCA			1					1
GGTTCT				1				1
GTGGCG	1							1
TCAGGA			1					1
TGCCGT	1							1
TGGCTT	1							1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	total
AACC/GGTT	-						1	1
AAGG/CCTT	-	1						1
AGCC/CTGG	-	1						1
AGGGC/CCCTG	1							1
ATCCC/ATGGG	1							1
CCGCG/CGCGG	3							3
AAAGCC/CTTTGG	1							1
AACCAG/CTGGTT				1				1
AACGGC/CCGTTG	1							1
AAGATC/ATCTTG		1						1
AAGGCC/CCTTGG	1							1
ACACCG/CGGTGT	1							1
ACAGCC/CTGTGG	1							1
ACCGCC/CGGTGG	1							1
ACCTGC/AGGTGC	1		2					3
ACCTGG/AGGTCC	1							1
AGGATC/ATCCTG			1					1
AGGCGC/CCTGCG	2							2
