Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-68/megassr/results/hub_GCF_003700475.1/fasta/hub_GCF_003700475.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              344
Total size of examined sequences (bp):           5924650
Total number of identified SSRs:                 36
Number of SSR containing sequences:              32
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	7
5	7
6	22

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
AC	-	-	-	1	1
CG	-	-	-	2	2
GC	-	-	-	4	4
CAGCA			1		1
CTTGC	1				1
GAGGC	1				1
GCGGT		1			1
GGCGC	1				1
GTTCA	1				1
TGTGA	1				1
ACCAGC	1				1
ACCGAT	1	1			2
ACCTGC	1				1
ATGAAT	1				1
CACCGA	1				1
CAGGAA	1				1
CAGTCA	1				1
CCACCG	1				1
CGCTGG	1				1
GAAGCC	1				1
GACGCT		1			1
GCACAA	1				1
GCCAGC	1				1
GCCGCA	1				1
GCCTGA	1				1
GCTCTT		1			1
GCTGGC	1				1
GGGCTG	1				1
TGCACC	1				1
TGCTAT				1	1
TGGCGT	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AC/GT	-	-	-	1	1
CG/CG	-	-	-	6	6
AACTG/AGTTC	1				1
AAGGC/CCTTG	1				1
ACAGC/CTGTG			1		1
ACATC/ATGTG	1				1
ACCGC/CGGTG		1			1
AGGCG/CCTCG	1				1
CCGCG/CGCGG	1				1
AACAGG/CCTGTT	1				1
AACGCC/CGTTGG	1				1
AAGAGC/CTCTTG		1			1
AAGCAC/CTTGTG	1				1
AAGCCG/CGGCTT	1				1
AATAGC/ATTGCT				1	1
AATATG/ATATTC	1				1
ACACCG/CGGTGT	1				1
ACAGTC/ACTGTG	1				1
ACCAGC/CTGGTG	1				1
ACCGAT/ATCGGT	1	1			2
ACCGCC/CGGTGG	1				1
ACCTGC/AGGTGC	2				2
ACGCTG/AGCGTC		1			1
AGCCCC/CTGGGG	1				1
AGCCGC/CGGCTG	1				1
AGCCTG/AGGCTC	1				1
AGCGCC/CGCTGG	3				3
