Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-41/megassr/results/hub_GCF_003699655.1/fasta/hub_GCF_003699655.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              212
Total size of examined sequences (bp):           5857397
Total number of identified SSRs:                 45
Number of SSR containing sequences:              36
Number of sequences containing more than 1 SSR:  8
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	10
5	8
6	27

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
AC	-	-	-	1			1
CG	-	-	-	1	1		2
GC	-	-	-	5	1		6
TC	-	-	-	1			1
CGGCG	1						1
CGTGG		1					1
GAGGC	1						1
GGCAA	1						1
GGCGC	1						1
GTCGG	1						1
GTTCA	1						1
GTTCC	1						1
AACCTG	1						1
ACAACG	1						1
ACCGAT	1						1
ACCTGC					1		1
ACGGTA	1						1
CACACC			1				1
CACCGA			1				1
CAGCCC	1						1
CCAGAA		1					1
CCATCG	1						1
CGGTAT	1						1
CTATCA		1					1
CTGGAT						1	1
CTGGTT	1						1
CTTGTG		1					1
GAGAAA			1				1
GAGGCT	1						1
GCCCTG	1						1
GCCGGA	1						1
GCTGGC	2						2
GCTGGT	1						1
GGCTCA	1						1
TCAGCT	1						1
TCAGGC	1						1
TCCTGC	1						1
TGCGGC	1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
AC/GT	-	-	-	1			1
AG/CT	-	-	-	1			1
CG/CG	-	-	-	6	2		8
AACGG/CCGTT	1						1
AACTG/AGTTC	1						1
AAGGC/CCTTG	1						1
ACCCG/CGGGT	1						1
ACGCC/CGTGG		1					1
AGGCG/CCTCG	1						1
CCGCG/CGCGG	2						2
AAAGAG/CTCTTT			1				1
AACCAG/CTGGTT	1	1					2
AACCTG/AGGTTC	1						1
AACGAC/CGTTGT	1						1
AACGGT/ACCGTT	1						1
AAGCAC/CTTGTG		1					1
AAGCTG/AGCTTC	1						1
ACACCC/GGGTGT			1				1
ACACCG/CGGTGT			1				1
ACCAGC/CTGGTG	1						1
ACCGAT/ATCGGT	2						2
ACCTGC/AGGTGC					1		1
ACTATC/AGTGAT		1					1
AGATCC/ATCTGG						1	1
AGCAGG/CCTGCT	1						1
AGCCCC/CTGGGG	1						1
AGCCGC/CGGCTG	1						1
AGCCGG/CCGGCT	1						1
AGCCTC/AGGCTG	1						1
AGCCTG/AGGCTC	2						2
AGCGCC/CGCTGG	2						2
AGGGCC/CCCTGG	1						1
ATCGCC/ATGGCG	1						1
