Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-37/megassr/results/hub_GCF_003699635.1/fasta/hub_GCF_003699635.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              378
Total size of examined sequences (bp):           6408086
Total number of identified SSRs:                 37
Number of SSR containing sequences:              30
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    3


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	1
4	3
5	4
6	27

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	total
GC	-	-	-	1													1
TG	-	-	-	1													1
CAA	-	-									1						1
CCAA	-						1										1
CGCC	-	1															1
GCTG	-															1	1
CCGCG	1																1
CTCGC		1															1
GCCTG	1																1
TGCCG	1																1
AGGCAA	1																1
CAACCG	1																1
CACCTA	1																1
CAGCGG				1													1
CCAACA	1																1
CCAACT	1																1
CCATTG		1															1
CCCGAT	1																1
CCTGCA							1										1
CTTGCA	1																1
GAGCAC		1															1
GCCACC	1																1
GCGATG	1																1
GCGCCG		1															1
GCTGGC	1																1
GGCGGT	1																1
GGTGCG	1																1
GGTTGC	1																1
GTCCAT	1																1
TACAGC												1					1
TACAGG	1																1
TCAGGC		1															1
TCGGCG	1																1
TGACCT	1																1
TGATCC	1																1
TGGCGG	1																1
TTGCCA	1																1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	total
AC/GT	-	-	-	1													1
CG/CG	-	-	-	1													1
AAC/GTT	-	-									1						1
AACC/GGTT	-						1										1
AGCC/CTGG	-															1	1
CCCG/CGGG	-	1															1
ACGGC/CCGTG	1																1
AGGCC/CCTGG	1																1
AGGCG/CCTCG		1															1
CCGCG/CGCGG	1																1
AAAGGC/CCTTTG	1																1
AACACC/GGTGTT	1																1
AACCGC/CGGTTG	2																2
AACTCC/AGTTGG	1																1
AAGGTC/ACCTTG	1																1
AAGTGC/ACTTGC	1																1
AATGGC/ATTGCC	1	1															2
ACACCT/AGGTGT	1																1
ACAGCT/AGCTGT												1					1
ACAGGT/ACCTGT	1																1
ACATGG/ATGTCC	1																1
ACCCGC/CGGGTG	1																1
ACCGCC/CGGTGG	3																3
ACCTGC/AGGTGC							1										1
ACGAGC/CGTGCT		1															1
ACGCCG/CGGCGT	1																1
AGCCTG/AGGCTC		1															1
AGCGCC/CGCTGG	1																1
AGCGGC/CCGCTG				1													1
AGGATC/ATCCTG	1																1
ATCCCG/ATCGGG	1																1
ATCGCC/ATGGCG	1																1
CCGGCG/CCGGCG		1															1
