Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-67/megassr/results/hub_GCF_003699605.1/fasta/hub_GCF_003699605.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              323
Total size of examined sequences (bp):           6051186
Total number of identified SSRs:                 35
Number of SSR containing sequences:              29
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	2
3	2
4	2
5	7
6	21

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1
CG	-	-	-	1															1
GC	-	-	-	1															1
CCA	-	-		1															1
TCA	-	-			1														1
TGGC	-	1																	1
TTGG	-		1																1
CACGC	1																		1
CGCGC	1																		1
CGCGG	1																		1
GCGGC	1																		1
GGCCT	1																		1
TGAAT	1																		1
TGCGC	1																		1
ACACCA		1																	1
ACCGCC	1																		1
ACCTGC	2																		2
CCGGTT	1																		1
CGAGGC	1																		1
CGCCAG	1																		1
CGGTGC	1																		1
CTTGGC	1																		1
GCAGGT	1																		1
GCCCCT	1																		1
GCCTAC	1																		1
GCTCGG	1																		1
GGCGGT	1																		1
GGCTTG	1																		1
GGTTCT	1																		1
TCCTCA		1																	1
TGCCGT		1																	1
TGCGGT	1																		1
TGCTCC					1														1
TGGCTT	1																		1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1
CG/CG	-	-	-	2															2
ACC/GGT	-	-		1															1
ATC/ATG	-	-			1														1
AACC/GGTT	-		1																1
AGCC/CTGG	-	1																	1
AATTC/AATTG	1																		1
ACGCC/CGTGG	1																		1
AGCGC/CGCTG	1																		1
AGGCC/CCTGG	1																		1
CCGCG/CGCGG	3																		3
AAAGCC/CTTTGG	1																		1
AACACC/GGTGTT		1																	1
AACCAG/CTGGTT	1																		1
AACCGC/CGGTTG	1																		1
AACCGG/CCGGTT	1																		1
AACGGC/CCGTTG		1																	1
AAGCCC/CTTGGG	1																		1
AAGGCC/CCTTGG	1																		1
ACCGCC/CGGTGG	2																		2
ACCGGC/CCGGTG	1																		1
ACCTGC/AGGTGC	3																		3
ACGCCT/AGGCGT	1																		1
AGCAGG/CCTGCT					1														1
AGCCCG/CGGGCT	1																		1
AGCGCC/CGCTGG	1																		1
AGGATG/ATCCTC		1																	1
AGGCCG/CCTCGG	1																		1
AGGGGC/CCCCTG	1																		1
