Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-36/megassr/results/hub_GCF_003699595.1/fasta/hub_GCF_003699595.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              250
Total size of examined sequences (bp):           5890334
Total number of identified SSRs:                 28
Number of SSR containing sequences:              23
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	2
5	2
6	22

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
CG	-	-	-	2	2
CCG	-	-	1		1
GCG	-	-	1		1
GCGCA	1				1
GCGCC	1				1
CACATT		1			1
CAGGTG			1		1
CAGTGC		1			1
CCACCG	1				1
CCATGA	1				1
CCCGAG	1				1
CCTACA			1		1
CCTCTT	1				1
CCTGTT	1				1
CGCCAC	1				1
GACCTC	1				1
GATAGT		1			1
GCAACC	1				1
GCATCG		1			1
GCCAGC	1				1
GCTGGT		1			1
GGGTTG	1				1
TCAAAT	1				1
TCAGGC	1				1
TGAGCA	1				1
TGCTGA				1	1
TTGGCG			1		1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
CG/CG	-	-	-	2	2
CCG/CGG	-	-	2		2
AGCGC/CGCTG	1				1
CCGCG/CGCGG	1				1
AAATTC/AATTTG	1				1
AACAGG/CCTGTT	1				1
AACCCC/GGGGTT	1				1
AACCGC/CGGTTG	1				1
AACGCC/CGTTGG			1		1
AAGAGG/CCTCTT	1				1
AATGTG/ACATTC		1			1
ACACCT/AGGTGT			1		1
ACCAGC/CTGGTG		1			1
ACCATG/ATGGTC	1				1
ACCGCC/CGGTGG	2				2
ACCTCG/AGGTCG	1				1
ACCTGC/AGGTGC			1		1
ACTATC/AGTGAT		1			1
ACTGGC/AGTGCC		1			1
AGCATC/ATGCTG				1	1
AGCATG/ATGCTC	1				1
AGCCCG/CGGGCT	1				1
AGCCTG/AGGCTC	1				1
AGCGCC/CGCTGG	1				1
ATCGGC/ATGCCG		1			1
