Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-66/megassr/results/hub_GCF_003699565.1/fasta/hub_GCF_003699565.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              384
Total size of examined sequences (bp):           5886078
Total number of identified SSRs:                 41
Number of SSR containing sequences:              36
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	2
3	4
4	1
5	8
6	25

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	total
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1	1
CG	-	-	-	1																1
GC	-	-	-	1																1
CAC	-	-		1																1
TGG	-	-				1														1
TGT	-	-			1															1
TTG	-	-			1															1
AGCC	-	1																		1
ATCAG	1																			1
CAGGC	1																			1
CGCCG	1																			1
GCGCC	1																			1
GGCGC	1																			1
TGAAT	1																			1
TGCTG	1																			1
TGGCG			1																	1
AACCGC	1																			1
ACACCA	1																			1
CACCGC	1																			1
CATGAC	1																			1
CCAGAA			1																	1
CCCAAG	1																			1
CCCGAG		1																		1
CCGGTT	1																			1
CTCCAG			1																	1
CTGGCA	1																			1
GCAGGT	1																			1
GCCAAA	1																			1
GCCAAG	1																			1
GCCCCT		1																		1
GCCTAC	1																			1
GGAACG	1																			1
GGCACC	1																			1
GGCCTC	1																			1
GGCGGT	1																			1
GGTGCA			1																	1
GGTGCC	1																			1
TCGTGC	1																			1
TGCAGG		1																		1
TGCCGT	1																			1
TTACGA				1																1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1	1
CG/CG	-	-	-	2																2
AAC/GTT	-	-			2															2
ACC/GGT	-	-		1		1														2
AGCC/CTGG	-	1																		1
AATTC/AATTG	1																			1
ACAGC/CTGTG	1																			1
ACGCC/CGTGG			1																	1
AGATC/ATCTG	1																			1
AGGCC/CCTGG	1																			1
CCGCG/CGCGG	3																			3
AAAGCC/CTTTGG	1																			1
AACACC/GGTGTT	1																			1
AACCAG/CTGGTT			1																	1
AACCGC/CGGTTG	1																			1
AACCGG/CCGGTT	1																			1
AACGGC/CCGTTG	1																			1
AACGGG/CCCGTT	1																			1
AAGCCC/CTTGGG	1																			1
AAGGCC/CCTTGG	1																			1
AATCGT/ACGATT				1																1
ACCATG/ATGGTC	1																			1
ACCGCC/CGGTGG	2																			2
ACCGGC/CCGGTG	2																			2
ACCTGC/AGGTGC	1	1	1																	3
ACGAGC/CGTGCT	1																			1
ACGCCT/AGGCGT	1																			1
ACTGGC/AGTGCC	1																			1
AGCCCG/CGGGCT		1																		1
AGCTCC/AGCTGG			1																	1
AGGCCG/CCTCGG	1																			1
AGGGGC/CCCCTG		1																		1
