Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-65/megassr/results/hub_GCF_003699095.1/fasta/hub_GCF_003699095.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1251
Total size of examined sequences (bp):           5917242
Total number of identified SSRs:                 32
Number of SSR containing sequences:              30
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
3	4
4	2
5	8
6	18

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
ATA	-	-		1		1
CAA	-	-		1		1
TGG	-	-	1	1		2
CCAA	-		1			1
TGGC	-	1				1
CAGCA					1	1
CCTGC	1					1
CGCCG			1			1
GCGCA	1					1
GGCCT	1					1
GGCGC	1					1
GGTCA	1					1
TGAAT	1					1
AATCTG	1					1
ACCTGC	1					1
ACTGGT		1				1
CACCTG	1					1
CAGGGG	1					1
CCGGTT	1					1
CGTTGT	1					1
CTGCGT		1				1
CTGGTA	1					1
CTTGGC	1					1
GCAGGA	1					1
GCAGGT	1					1
GCTCGG	1					1
GGCTCG	1					1
GGTGAT				1		1
GGTTCT	1					1
GTGCAG	1					1
TGCCGT	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
AAC/GTT	-	-		1		1
AAT/ATT	-	-		1		1
ACC/GGT	-	-	1	1		2
AACC/GGTT	-		1			1
AGCC/CTGG	-	1				1
AATTC/AATTG	1					1
ACAGC/CTGTG					1	1
ACCTG/AGGTC	1					1
AGCGC/CGCTG	1					1
AGGCC/CCTGG	1					1
AGGGC/CCCTG	1					1
CCGCG/CGCGG	1		1			2
AACCAG/CTGGTT	1					1
AACCGG/CCGGTT	1					1
AACGAC/CGTTGT	1					1
AACGGC/CCGTTG	1					1
AAGGCC/CCTTGG	1					1
AATCTG/AGATTC	1					1
ACCAGT/ACTGGT	1	1				2
ACCATC/ATGGTG				1		1
ACCTGC/AGGTGC	4					4
ACGCAG/CGTCTG		1				1
AGCAGG/CCTGCT	1					1
AGCCCG/CGGGCT	2					2
AGGGGC/CCCCTG	1					1
