Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-43/megassr/results/hub_GCF_003086175.2/fasta/hub_GCF_003086175.2_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              218
Total size of examined sequences (bp):           2535989
Total number of identified SSRs:                 17
Number of SSR containing sequences:              16
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	1
5	6
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
AT	-	-	-	1	1
TA	-	-	-	3	3
TAA	-	-	1		1
ATAAT	1				1
ATTCT	1				1
CATGT	1				1
CTTTT	1				1
TAAAT	1				1
TTAAT	1				1
AAAAAT	1				1
AAAGAA	1				1
AATGAT	1				1
ATCATT	1				1
TATAGC	1				1
TGTAGT	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AT/AT	-	-	-	4	4
AAT/ATT	-	-	1		1
AAAAG/CTTTT	1				1
AAATT/AATTT	2				2
AATAG/ATTCT	1				1
AATAT/ATATT	1				1
ACATG/ATGTC	1				1
AAAAAG/CTTTTT	1				1
AAAAAT/ATTTTT	1				1
AACTAC/AGTTGT	1				1
AATGAT/ATCATT	2				2
AGCTAT/AGCTAT	1				1
