Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-29/megassr/results/hub_GCF_003034345.1/fasta/hub_GCF_003034345.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              119
Total size of examined sequences (bp):           966773
Total number of identified SSRs:                 17
Number of SSR containing sequences:              16
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	2
5	7
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
AT	-	-	-							1	1
TA	-	-	-				1		1		2
CAA	-	-		1							1
TAA	-	-		1							1
AAAAT	1										1
ATAAT	1										1
GAAAA	1										1
TATAT	1										1
TATTT	1										1
TTAAA	1										1
TTTTA	1										1
AAAAGA	1										1
AAAGAT	1										1
CTATTT	1										1
CTTAAA	1										1
TAATTA	1										1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
AT/AT	-	-	-				1		1	1	3
AAC/GTT	-	-		1							1
AAT/ATT	-	-		1							1
AAAAG/CTTTT	1										1
AAAAT/ATTTT	3										3
AAATT/AATTT	1										1
AATAT/ATATT	2										2
AAAAAG/CTTTTT	1										1
AAACTT/AAGTTT	1										1
AAAGAT/ATCTTT	1										1
AAATAG/ATTTCT	1										1
AATTAT/AATTAT	1										1
