Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-28/megassr/results/hub_GCF_003034305.1/fasta/hub_GCF_003034305.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              171
Total size of examined sequences (bp):           955365
Total number of identified SSRs:                 17
Number of SSR containing sequences:              16
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	2
5	6
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	total
AT	-	-	-									1		1
TA	-	-	-					1	1				1	3
CAA	-	-	1											1
TAA	-	-		1										1
AAAAT	1													1
ATAAT	1													1
GAAAA	1													1
TATAT	1													1
TATTT	1													1
TTAAA	1													1
AAAAGA	1													1
AAAGAT	1													1
CTATTT	1													1
CTTAAA	1													1
TTTTCT	1													1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	total
AT/AT	-	-	-					1	1			1	1	4
AAC/GTT	-	-	1											1
AAT/ATT	-	-		1										1
AAAAG/CTTTT	1													1
AAAAT/ATTTT	2													2
AAATT/AATTT	1													1
AATAT/ATATT	2													2
AAAAAG/CTTTTT	2													2
AAACTT/AAGTTT	1													1
AAAGAT/ATCTTT	1													1
AAATAG/ATTTCT	1													1
