Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-40/megassr/results/hub_GCF_003034265.1/fasta/hub_GCF_003034265.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              20
Total size of examined sequences (bp):           1008443
Total number of identified SSRs:                 22
Number of SSR containing sequences:              10
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	12
5	6
6	4

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
CT	-	-	-	1								1
TA	-	-	-				2	1	6		2	11
AAAAT	1											1
ATATT	1											1
ATTTA	1											1
CTTTT	1											1
TAAAA	1											1
TTTTC	1											1
AAAAGA	1											1
ATCTTT	1											1
TCAATT	1											1
TTTAAG	1											1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
AG/CT	-	-	-	1								1
AT/AT	-	-	-				2	1	6		2	11
AAAAG/CTTTT	2											2
AAAAT/ATTTT	2											2
AAATT/AATTT	1											1
AATAT/ATATT	1											1
AAAAAG/CTTTTT	1											1
AAACTT/AAGTTT	1											1
AAAGAT/ATCTTT	1											1
AAATTG/AATTTC	1											1
