Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-39/megassr/results/hub_GCF_003031675.1/fasta/hub_GCF_003031675.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              91
Total size of examined sequences (bp):           6120652
Total number of identified SSRs:                 25
Number of SSR containing sequences:              20
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	4
5	8
6	12

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
GC	-	-	-	1	1
CGC	-	-	1		1
GCC	-	-	2		2
TGG	-	-	1		1
AATTC	1				1
CGGCA	1				1
CGGCG	1				1
CTGCC	1				1
GCGGC	2				2
TCCTG	1				1
TGCCG	1				1
AAGATC		1			1
ACCCAC	1				1
ACCTGC	1				1
ATGGCC	1				1
CAGAGC	1				1
CAGGCC	1				1
CCAGCC			1		1
CCGCCA	1				1
GCACCG	1				1
GGGCTT	1				1
GTGGCG	1				1
TGGTGC	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
CG/CG	-	-	-	1	1
ACC/GGT	-	-	1		1
CCG/CGG	-	-	3		3
AATTC/AATTG	1				1
ACAGG/CCTGT	1				1
ACGGC/CCGTG	2				2
AGGGC/CCCTG	1				1
CCGCG/CGCGG	3				3
AAGATC/ATCTTG		1			1
AAGCCC/CTTGGG	1				1
ACACCC/GGGTGT	1				1
ACCAGC/CTGGTG	1				1
ACCGCC/CGGTGG	2				2
ACCGGC/CCGGTG	1				1
ACCTGC/AGGTGC	1				1
AGAGCC/CTCTGG	1				1
AGCCCC/CTGGGG			1		1
AGGCCC/CCTGGG	1				1
ATGGCC/ATGGCC	1				1
