Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-41/megassr/results/hub_GCF_002934985.1/fasta/hub_GCF_002934985.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              225
Total size of examined sequences (bp):           5533841
Total number of identified SSRs:                 41
Number of SSR containing sequences:              20
Number of sequences containing more than 1 SSR:  9
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	18
5	9
6	9

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
CG	-	-	-	3	1	4
GC	-	-	-	1		1
ATG	-	-		1		1
CAG	-	-	2			2
CCG	-	-	1			1
CGC	-	-	1			1
CGG	-	-	4			4
CTG	-	-	2			2
GCC	-	-	2			2
GCG	-	-	1			1
GGC	-	-		1		1
GGT	-	-	1			1
GTC	-	-	1			1
TCG	-	-	1			1
AATAA	1					1
CCCGG	1					1
CCGCG	1					1
CGTGG	1					1
GCGCG	1					1
GCGCT		1				1
GGCGC	1					1
TTTAT	1					1
TTTTA	1					1
CACCAG	1					1
CCGGAG		1				1
CGACTC	1					1
CGACTT	1					1
CGCCCT	1					1
CTGGCC	1					1
GACGAA	1					1
GCCAGC	1					1
GTGGAA	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
CG/CG	-	-	-	4	1	5
ACC/GGT	-	-	1			1
ACG/CGT	-	-	2			2
AGC/CTG	-	-	4			4
ATC/ATG	-	-		1		1
CCG/CGG	-	-	9	1		10
AAAAT/ATTTT	3					3
ACGCC/CGTGG	1					1
AGCGC/CGCTG		1				1
CCCGG/CCGGG	1					1
CCGCG/CGCGG	3					3
AAGACG/CGTCTT	1					1
AAGTCG/ACTTCG	1					1
AAGTGG/ACTTCC	1					1
ACCAGC/CTGGTG	1					1
ACTCCG/AGTCGG	1					1
AGCCGG/CCGGCT		1				1
AGCGCC/CGCTGG	1					1
AGGGCC/CCCTGG	1					1
AGGGCG/CCCTCG	1					1
