Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-40/megassr/results/hub_GCF_002934865.1/fasta/hub_GCF_002934865.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              172
Total size of examined sequences (bp):           5471259
Total number of identified SSRs:                 47
Number of SSR containing sequences:              23
Number of sequences containing more than 1 SSR:  12
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	3
2	4
3	19
5	8
6	13

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-															1																																																										2	3
CG	-	-	-	2	1																																																																																						3
GC	-	-	-	1																																																																																							1
CAG	-	-	2																																																																																								2
CCA	-	-	1																																																																																								1
CCG	-	-	3																																																																																								3
CGC	-	-	1																																																																																								1
CGG	-	-	3																																																																																								3
CTG	-	-	1																																																																																								1
GAC	-	-	1																																																																																								1
GAG	-	-	1																																																																																								1
GCA	-	-	1																																																																																								1
GCC	-	-	1																																																																																								1
GCG	-	-	1																																																																																								1
GGC	-	-	1	1																																																																																							2
GTC	-	-	1																																																																																								1
AATAA	1																																																																																										1
CCACG	1																																																																																										1
CCCGG	1																																																																																										1
CCGCG	1																																																																																										1
CGCGC	1																																																																																										1
GCGGC	1																																																																																										1
GGCGC	1																																																																																										1
TTTAT	1																																																																																										1
CACCAG	1		1																																																																																								2
CCGCCT	1																																																																																										1
CGACTT	1																																																																																										1
CGCCCT	1																																																																																										1
CTGGGG	1																																																																																										1
GCGCCT	1																																																																																										1
GCTCCG		1																																																																																									1
GGCCAG		1																																																																																									1
GGGGCT	1																																																																																										1
GTGCTG					1																																																																																						1
GTGGAA	1																																																																																										1
TCTTCG	1																																																																																										1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-															1																																																										2	3
CG/CG	-	-	-	3	1																																																																																						4
ACC/GGT	-	-	1																																																																																								1
ACG/CGT	-	-	2																																																																																								2
AGC/CTG	-	-	4																																																																																								4
AGG/CCT	-	-	1																																																																																								1
CCG/CGG	-	-	10	1																																																																																							11
AAAAT/ATTTT	2																																																																																										2
ACGCC/CGTGG	1																																																																																										1
CCCGG/CCGGG	1																																																																																										1
CCGCG/CGCGG	4																																																																																										4
AAGACG/CGTCTT	1																																																																																										1
AAGTCG/ACTTCG	1																																																																																										1
AAGTGG/ACTTCC	1																																																																																										1
ACCAGC/CTGGTG	1		1		1																																																																																						3
AGCCCC/CTGGGG	2																																																																																										2
AGCCGG/CCGGCT		1																																																																																									1
AGGCGC/CCTGCG	1																																																																																										1
AGGCGG/CCGCCT	1																																																																																										1
AGGGCC/CCCTGG		1																																																																																									1
AGGGCG/CCCTCG	1																																																																																										1
