Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-38/megassr/results/hub_GCF_002917215.1/fasta/hub_GCF_002917215.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              185
Total size of examined sequences (bp):           6259099
Total number of identified SSRs:                 80
Number of SSR containing sequences:              45
Number of sequences containing more than 1 SSR:  17
Number of SSRs present in compound formation:    6


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	7
3	8
4	1
5	35
6	28

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	total
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-			1	1
AG	-	-	-	1																	1
CT	-	-	-		1																1
GA	-	-	-	1	1																2
GC	-	-	-	1																	1
TC	-	-	-	1	1																2
AAG	-	-		1																	1
AGG	-	-	2																		2
CTT	-	-	2																		2
GAG	-	-	1																		1
GGA	-	-	1																		1
TTC	-	-	1																		1
CTCC	-	1																			1
AGCGC	1																				1
AGGAG	1																				1
AGGGA	1																				1
CCGCG	2																				2
CTCCT	1																				1
CTCTC	1																				1
CTGCC		1																			1
CTTCC	1																				1
CTTCT	1																				1
GCGCC	1																				1
GCGCT	1																				1
GCTTT	1																				1
GGAGA	1																				1
GGCGC	1																				1
GGGAA	1																				1
GGGAG	2																				2
GTGTT	1																				1
TCCCT	3																				3
TCCTC	1																				1
TCTCC	1																				1
TCTTC	1																				1
TCTTT	1																				1
TGGCT	1																				1
TGGGC	1																				1
TTCCC	3																				3
TTCCT	1																				1
TTCTC	1																				1
TTCTT	1																				1
TTTCT	1																				1
AAGCAG						1															1
AGATCG	1																				1
ATTGGC		1																			1
CACGGG		1																			1
CAGGAC	1																				1
CAGGCC	1																				1
CAGGTG								1													1
CCCCCT	1																				1
CCGACA				1																	1
CCGCCA	1																				1
CCGTCG	1																				1
CCTGCG	1																				1
CGCCAG	1																				1
CGTCCG	1																				1
GAACCA	1																				1
GAAGAG	1																				1
GAGGGA	1																				1
GATGCT			1																		1
GCAACG		1																			1
GCCGCA	1																				1
GGTGCA		1		1																	2
TCAGGG	1																				1
TCGGCG		1																			1
TCGGGC	1																				1
TGAATA	1																				1
TGATGT	1																				1
TTTCTC	1																				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-			1	1
AG/CT	-	-	-	3	3																6
CG/CG	-	-	-	1																	1
AAG/CTT	-	-	3	1																	4
AGG/CCT	-	-	4																		4
AGGG/CCCT	-	1																			1
AAAAG/CTTTT	3																				3
AAAGC/CTTTG	1																				1
AAAGG/CCTTT	1																				1
AACAC/GTGTT	1																				1
AAGAG/CTCTT	3																				3
AAGCC/CTTGG	1																				1
AAGGG/CCCTT	9																				9
AGAGG/CCTCT	6																				6
AGCCC/CTGGG	1																				1
AGCGC/CGCTG	2																				2
AGGGC/CCCTG		1																			1
AGGGG/CCCCT	2																				2
CCGCG/CGCGG	4																				4
AAAGAG/CTCTTT	1																				1
AACATC/ATGTTG	1																				1
AACCAG/CTGGTT	1																				1
AACGGC/CCGTTG		1																			1
AAGAGG/CCTCTT	1																				1
AAGCAG/CTGCTT						1															1
AATATG/ATATTC	1																				1
AATGCC/ATTGGC		1																			1
ACACCG/CGGTGT				1																	1
ACCAGG/CCTGGT	1																				1
ACCCTG/AGGGTC	1																				1
ACCGCC/CGGTGG	1																				1
ACCTGC/AGGTGC		1		1				1													3
ACGCCG/CGGCGT		1																			1
ACGCGG/CCGCGT	1																				1
ACGGCG/CCGTCG	1																				1
ACGGGC/CCCGTG		1																			1
AGAGGG/CCCTCT	1																				1
AGATCG/ATCTCG	1																				1
AGCATC/ATGCTG			1																		1
AGCCCG/CGGGCT	1																				1
AGCCGC/CGGCTG	1																				1
AGCGCC/CGCTGG	1																				1
AGGCCC/CCTGGG	1																				1
AGGCGC/CCTGCG	1																				1
AGGGGG/CCCCCT	1																				1
