Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-35/megassr/results/hub_GCF_002917195.1/fasta/hub_GCF_002917195.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              65
Total size of examined sequences (bp):           5994384
Total number of identified SSRs:                 35
Number of SSR containing sequences:              20
Number of sequences containing more than 1 SSR:  11
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
5	9
6	25

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
CG	-	-	-	1						1
ACAAC	1									1
AGCCA	1									1
AGCGC	1									1
CCGCG	1									1
CGCCG	1									1
CGCGC	1									1
CGCGG	1									1
GCCCA	1									1
GCTGC	1									1
AAGCTA									1	1
AGATCG	1									1
ATTGGC		1								1
CAAGAT	1									1
CACCTG		1								1
CAGGAA	1									1
CAGGTG								1		1
CCGACG		1								1
CGCCAG	1									1
CGTCCG		1								1
CTGACG	1									1
CTGCTC	1									1
GATACC	1									1
GCAACG	1									1
GCAGGT	1									1
GCCTGA	1									1
GCGACG	1									1
GGCCAT	1									1
GGCCTG	1									1
GGTGCA		1								1
GGTGTC			1							1
GTTCGC			1							1
TCAGGG	1									1
TCGGGC	1									1
TCTACA	1									1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
CG/CG	-	-	-	1						1
AACAC/GTGTT	1									1
AAGCC/CTTGG	1									1
AGCCC/CTGGG	1									1
AGCGC/CGCTG	2									2
CCGCG/CGCGG	4									4
AAAGCT/AGCTTT									1	1
AACAGG/CCTGTT	1									1
AACGCG/CGCGTT			1							1
AACGGC/CCGTTG	1									1
AAGATC/ATCTTG	1									1
AATGCC/ATTGGC		1								1
ACACCG/CGGTGT			1							1
ACATCT/AGATGT	1									1
ACCCTG/AGGGTC	1									1
ACCGAT/ATCGGT	1									1
ACCTGC/AGGTGC	1	2						1		4
ACGCCG/CGGCGT		1								1
ACGCGG/CCGCGT		1								1
ACGCTG/AGCGTC	1									1
ACGGCG/CCGTCG	1									1
AGATCG/ATCTCG	1									1
AGCAGG/CCTGCT	1									1
AGCCCG/CGGGCT	1									1
AGCCTG/AGGCTC	1									1
AGCGCC/CGCTGG	1									1
AGGCCC/CCTGGG	1									1
ATGGCC/ATGGCC	1									1
