Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-34/megassr/results/hub_GCF_002917175.1/fasta/hub_GCF_002917175.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              23
Total size of examined sequences (bp):           5872916
Total number of identified SSRs:                 21
Number of SSR containing sequences:              7
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	1
5	7
6	12

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	total
CG	-	-	-	1				1
TTA	-	-					1	1
CCGCG	1							1
CGCGG	1							1
GCAGC	1							1
GCGGC	1							1
GCTGC	1							1
GGCGC	1							1
TCGAA	1							1
AGATCG	1							1
CAGGTC	1							1
CAGGTG		1						1
CCAGCA	1							1
CCCGAA		1						1
CCTACA			1					1
GCAGAA	1							1
GTTGAT	1							1
TCAGGC	2							2
TCCGGC		1						1
TGGCTA			1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	total
CG/CG	-	-	-	1				1
AAT/ATT	-	-					1	1
AATCG/ATTCG	1							1
AGCGC/CGCTG	2							2
CCGCG/CGCGG	4							4
AACATC/ATGTTG	1							1
AACCCG/CGGGTT		1						1
AAGCAG/CTGCTT	1							1
ACACCT/AGGTGT			1					1
ACCAGC/CTGGTG	1							1
ACCTGC/AGGTGC		1						1
ACCTGG/AGGTCC	1							1
AGATCG/ATCTCG	1							1
AGCCAT/ATGGCT			1					1
AGCCGG/CCGGCT		1						1
AGCCTG/AGGCTC	2							2
