Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-37/megassr/results/hub_GCF_002917155.1/fasta/hub_GCF_002917155.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              90
Total size of examined sequences (bp):           6158476
Total number of identified SSRs:                 36
Number of SSR containing sequences:              22
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
5	11
6	25

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	total
AGCGC	1							1
CCGCG	2							2
GCGCC	1							1
GCGCT	1							1
GCTTT	1							1
GGCGC	1							1
GGGCA		1						1
GTGTT	1							1
TGGCT	1							1
TGGGC	1							1
AAGCAG						1		1
AGATCG	1							1
AGCATC			1					1
ATGTCC	1							1
ATTGGC			1					1
CACCTG		1						1
CACGGG		1						1
CAGGCC	1							1
CAGGTG							1	1
CCGACA				1				1
CCGCCA	1							1
CCTGCG	1							1
CGCCAG	1							1
CGTCCG	1							1
GAACCA	1							1
GAAGAG	1							1
GCAACG		1						1
GCCGCA	1							1
GCGACG	1							1
GGTGCA			1					1
TCAGGG	1							1
TCGGCG		1						1
TCGGGC	1							1
TGAATA	1							1
TGATGT	1							1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	total
AAAGC/CTTTG	1							1
AACAC/GTGTT	1							1
AAGCC/CTTGG	1							1
AGCCC/CTGGG	1							1
AGCGC/CGCTG	2							2
AGGGC/CCCTG		1						1
CCGCG/CGCGG	4							4
AACATC/ATGTTG	1							1
AACCAG/CTGGTT	1							1
AACGGC/CCGTTG		1						1
AAGAGG/CCTCTT	1							1
AAGCAG/CTGCTT						1		1
AATATG/ATATTC	1							1
AATGCC/ATTGGC			1					1
ACACCG/CGGTGT				1				1
ACATGG/ATGTCC	1							1
ACCCTG/AGGGTC	1							1
ACCGCC/CGGTGG	1							1
ACCTGC/AGGTGC		1	1				1	3
ACGCCG/CGGCGT		1						1
ACGCGG/CCGCGT	1							1
ACGGCG/CCGTCG	1							1
ACGGGC/CCCGTG		1						1
AGATCG/ATCTCG	1							1
AGCATC/ATGCTG			1					1
AGCCCG/CGGGCT	1							1
AGCCGC/CGGCTG	1							1
AGCGCC/CGCTGG	1							1
AGGCCC/CCTGGG	1							1
AGGCGC/CCTGCG	1							1
