Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-58/megassr/results/hub_GCF_002847235.2/fasta/hub_GCF_002847235.2_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              18
Total size of examined sequences (bp):           2626639
Total number of identified SSRs:                 9
Number of SSR containing sequences:              7
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	2
6	3

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
AT	-	-	-	1		1	2
TA	-	-	-	2			2
GTT	-	-	1				1
TTC	-	-	1				1
AAAGAC	1						1
TAAAAT	1						1
TCCAAA	1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
AT/AT	-	-	-	3		1	4
AAC/GTT	-	-	1				1
AAG/CTT	-	-	1				1
AAAATT/AATTTT	1						1
AAAGAC/CTTTGT	1						1
AAATCC/ATTTGG	1						1
