Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-57/megassr/results/hub_GCF_002847225.2/fasta/hub_GCF_002847225.2_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              20
Total size of examined sequences (bp):           2490981
Total number of identified SSRs:                 16
Number of SSR containing sequences:              7
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    4


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	1
5	1
6	11

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	total
TA	-	-	-	2				1	3
AAC	-	-	1						1
TTTTA	1								1
ATTTGG	1								1
ATTTTA	1								1
GACGCT	1	1							2
GATGCG	1	1							2
GATGCT	1								1
GCCGAT	1	1		1					3
TTTGTC	1								1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	total
AT/AT	-	-	-	2				1	3
AAC/GTT	-	-	1						1
AAAAT/ATTTT	1								1
AAAATT/AATTTT	1								1
AAAGAC/CTTTGT	1								1
AAATCC/ATTTGG	1								1
ACGCTG/AGCGTC	1	1							2
AGCATC/ATGCTG	1								1
ATCCGC/ATGCGG	1	1							2
ATCGGC/ATGCCG	1	1		1					3
