Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-56/megassr/results/hub_GCF_002847205.2/fasta/hub_GCF_002847205.2_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              433
Total size of examined sequences (bp):           2516677
Total number of identified SSRs:                 22
Number of SSR containing sequences:              6
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    9


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	1
6	20

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
TA	-	-	-	1	1
AAC	-	-	1		1
CGTCAG		1			1
GCATCA	1				1
GCATCC	3	2			5
GCATCG	3	1		1	5
GCATCT	1				1
GCGTCA	2	1			3
TAAAAT	1				1
TCCAAA	1				1
TCGGCG	1	1			2

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AT/AT	-	-	-	1	1
AAC/GTT	-	-	1		1
AAAATT/AATTTT	1				1
AAATCC/ATTTGG	1				1
ACGCCG/CGGCGT	1	1			2
ACGCTG/AGCGTC	2	2			4
AGATGC/ATCTGC	1				1
AGCATC/ATGCTG	1				1
ATCCGC/ATGCGG	3	2			5
ATCGGC/ATGCCG	3	1		1	5
