Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-55/megassr/results/hub_GCF_002847175.1/fasta/hub_GCF_002847175.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              84
Total size of examined sequences (bp):           2546835
Total number of identified SSRs:                 18
Number of SSR containing sequences:              10
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    3


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	2
5	2
6	12

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
TA	-	-	-	1		1	2
AAC	-	-	1				1
TAT	-	-	1				1
AATAA	1						1
ATAAA	1						1
AAAGAC	1						1
ATTTTA	1						1
TCAGCG	3						3
TCCAAA	1						1
TCGGCG	1						1
TCTGCA	4	1					5

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
AT/AT	-	-	-	1		1	2
AAC/GTT	-	-	1				1
AAT/ATT	-	-	1				1
AAAAT/ATTTT	2						2
AAAATT/AATTTT	1						1
AAAGAC/CTTTGT	1						1
AAATCC/ATTTGG	1						1
ACGCCG/CGGCGT	1						1
ACGCTG/AGCGTC	3						3
AGATGC/ATCTGC	4	1					5
