Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-36/megassr/results/hub_GCF_002611615.1/fasta/hub_GCF_002611615.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              300
Total size of examined sequences (bp):           5953004
Total number of identified SSRs:                 39
Number of SSR containing sequences:              32
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
4	1
5	12
6	24

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	total
GC	-	-	-	1				1
GT	-	-	-	1				1
GAAG	-	1						1
AGCGC	1							1
CATGC	1							1
CGCCC	1							1
CGCGG	1							1
CGGCG	1							1
CTGCC				1				1
GCAGC	1							1
GGCGC	1							1
GTCCA	1							1
GTGTT	1							1
GTTCC	2							2
AGATCG	1							1
CACCTG	1							1
CACGGG	1							1
CAGATG				1				1
CCAGCG	1							1
CCGACA		1						1
CCGCCA	1							1
CCGTCG	1							1
CCTGCA							1	1
CGCCCA		1						1
CGGAGC	1							1
CGGGGC	1							1
CTGCAT	1							1
GAACCA	1							1
GATGCT		1						1
GCACCT	1							1
GCCTGA	1							1
GGCCTG	1							1
GGCTCA	1							1
GTTCGC		1						1
GTTGCC		1						1
TCAGGG	1							1
TCTGGT	2							2

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	total
AC/GT	-	-	-	1				1
CG/CG	-	-	-	1				1
AAGG/CCTT	-	1						1
AACAC/GTGTT	1							1
AACGG/CCGTT	2							2
ACTGG/AGTCC	1							1
AGCGC/CGCTG	2							2
AGGGC/CCCTG				1				1
ATGCC/ATGGC	1							1
CCCCG/CGGGG	1							1
CCGCG/CGCGG	3							3
AACCAG/CTGGTT	3							3
AACGCG/CGCGTT		1						1
AACGGC/CCGTTG		1						1
ACACCG/CGGTGT		1						1
ACCCTG/AGGGTC	1							1
ACCGCC/CGGTGG	1							1
ACCTGC/AGGTGC	2						1	3
ACGCCC/CGTGGG		1						1
ACGGCG/CCGTCG	1							1
ACGGGC/CCCGTG	1							1
AGATCG/ATCTCG	1							1
AGATGC/ATCTGC	1			1				2
AGCATC/ATGCTG		1						1
AGCCGG/CCGGCT	1							1
AGCCTG/AGGCTC	2							2
AGCGCC/CGCTGG	1							1
AGGCCC/CCTGGG	1							1
CCCCGG/CCGGGG	1							1
