Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-35/megassr/results/hub_GCF_002611605.1/fasta/hub_GCF_002611605.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              298
Total size of examined sequences (bp):           6083167
Total number of identified SSRs:                 43
Number of SSR containing sequences:              32
Number of sequences containing more than 1 SSR:  9
Number of SSRs present in compound formation:    3


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
4	1
5	13
6	27

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	total
GC	-	-	-	1				1
GT	-	-	-	1				1
GAAG	-	1						1
ACAAC	1							1
AGCGC	1							1
CCGCG	1							1
CGCGC	1							1
CGGCG	1							1
CTGCC				1				1
GCTGC	1							1
GGAAC	2							2
GGCAT	1							1
GGCGG	1							1
GGGCA				1				1
TGGAC	1							1
ACCAGA	2							2
AGATCG	1							1
AGCATC		1						1
CACCTG	1							1
CACGGG	1							1
CAGATG				1				1
CAGGTG							1	1
CCGACA		1						1
CCGCCA	1							1
CCGTCG	1							1
CGCCCA		1						1
CGCTGG	1							1
CGGAGC	1							1
CGGCCC	1							1
CGGCTC	1							1
CGGGGC	1							1
CTGCAT	1							1
GAACCA	1							1
GCACCT	1							1
GGCCTG	1							1
GGTGCA	1							1
GTTCGC		1						1
GTTGCC		1						1
TCAGGC	1							1
TCAGGG	1							1
TGAGCC	1							1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	total
AC/GT	-	-	-	1				1
CG/CG	-	-	-	1				1
AAGG/CCTT	-	1						1
AACAC/GTGTT	1							1
AACGG/CCGTT	2							2
ACTGG/AGTCC	1							1
AGCGC/CGCTG	2							2
AGGGC/CCCTG				2				2
ATGCC/ATGGC	1							1
CCCCG/CGGGG	1							1
CCGCG/CGCGG	3							3
AACCAG/CTGGTT	3							3
AACGCG/CGCGTT		1						1
AACGGC/CCGTTG		1						1
ACACCG/CGGTGT		1						1
ACCCTG/AGGGTC	1							1
ACCGCC/CGGTGG	1							1
ACCTGC/AGGTGC	3						1	4
ACGCCC/CGTGGG		1						1
ACGGCG/CCGTCG	1							1
ACGGGC/CCCGTG	1							1
AGATCG/ATCTCG	1							1
AGATGC/ATCTGC	1			1				2
AGCATC/ATGCTG		1						1
AGCCGG/CCGGCT	2							2
AGCCTG/AGGCTC	2							2
AGCGCC/CGCTGG	1							1
AGGCCC/CCTGGG	1							1
CCCCGG/CCGGGG	2							2
