Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-132/megassr/results/hub_GCF_002266315.1/fasta/hub_GCF_002266315.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              54
Total size of examined sequences (bp):           4743981
Total number of identified SSRs:                 24
Number of SSR containing sequences:              12
Number of sequences containing more than 1 SSR:  8
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	9
4	1
5	4
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
CG	-	-	-	2							2
GC	-	-	-	1							1
CAG	-	-	1								1
CCG	-	-	2								2
CGG	-	-	1								1
CTG	-	-								1	1
GCG	-	-	3								3
GCT	-	-	1								1
TGGC	-	1									1
CGCGC	2										2
GCGCA	1										1
GGCGC	1										1
ATGACC					1						1
CATCAC			1								1
CGACTT	1										1
CTGGCG	1										1
GACCAT				1							1
GCCAGC	1										1
TTCCGG	1										1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
CG/CG	-	-	-	3							3
AGC/CTG	-	-	2							1	3
CCG/CGG	-	-	6								6
AGCC/CTGG	-	1									1
AGCGC/CGCTG	1										1
CCGCG/CGCGG	3										3
AACCGG/CCGGTT	1										1
AAGTCG/ACTTCG	1										1
ACCATC/ATGGTG			1								1
ACCATG/ATGGTC				1	1						2
AGCGCC/CGCTGG	2										2
