Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-149/megassr/results/hub_GCF_002266205.2/fasta/hub_GCF_002266205.2_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           4568154
Total number of identified SSRs:                 28
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	6
3	10
5	3
6	9

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
CG	-	-	-	4									4
GC	-	-	-	2									2
CCG	-	-	1										1
CGC	-	-		1									1
CGG	-	-	2	1									3
GCA	-	-										1	1
GCC	-	-	1										1
GCG	-	-	2										2
GCT	-	-	1										1
CGCGC	1												1
GCGCC	1												1
GCGCG	1												1
CCGCAG	1												1
CCGCGG		1											1
CGGCAA	1												1
CTGGCG	1												1
CTGTTG	1												1
GAAGTC	1												1
GCCAGC	1												1
TCTTCA				1									1
TGGTCG								1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
CG/CG	-	-	-	6									6
AGC/CTG	-	-	1									1	2
CCG/CGG	-	-	6	2									8
CCGCG/CGCGG	3												3
AACAGC/CTGTTG	1												1
AACGGC/CCGTTG	1												1
AAGATG/ATCTTC				1									1
AAGTCG/ACTTCG	1												1
ACCACG/CGTGGT								1					1
AGCCGC/CGGCTG	1												1
AGCGCC/CGCTGG	2												2
CCGCGG/CCGCGG		1											1
