Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-127/megassr/results/hub_GCF_002266175.1/fasta/hub_GCF_002266175.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              31
Total size of examined sequences (bp):           4562440
Total number of identified SSRs:                 26
Number of SSR containing sequences:              13
Number of sequences containing more than 1 SSR:  7
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	10
3	7
5	4
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	total
AT	-	-	-	1				1
CG	-	-	-	4		1		5
GC	-	-	-	3			1	4
CCG	-	-	1					1
CGC	-	-	1					1
CGG	-	-	1					1
CTG	-	-			1			1
GCC	-	-	1					1
GCG	-	-	1					1
GCT	-	-	1					1
CGCGC	1							1
CGCGG	1							1
GCGCA	1							1
GGCGC	1							1
CACGAC							1	1
CGACTT	1							1
CGCCAG	1							1
GCCAGC	1							1
GCGGAG	1							1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	total
AT/AT	-	-	-	1				1
CG/CG	-	-	-	7		1	1	9
AGC/CTG	-	-	1		1			2
CCG/CGG	-	-	5					5
AGCGC/CGCTG	1							1
CCGCG/CGCGG	3							3
AAGTCG/ACTTCG	1							1
ACCACG/CGTGGT							1	1
AGCGCC/CGCTGG	2							2
AGGCGG/CCGCCT	1							1
