Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-126/megassr/results/hub_GCF_002266165.1/fasta/hub_GCF_002266165.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              46
Total size of examined sequences (bp):           4696577
Total number of identified SSRs:                 24
Number of SSR containing sequences:              13
Number of sequences containing more than 1 SSR:  7
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	2
2	7
3	5
5	3
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	total
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																																																		1																														1	2
CG	-	-	-	3	1	1																																																																																												5
GC	-	-	-	2																																																																																														2
AGC	-	-	1																																																																																															1
CCG	-	-	1																																																																																															1
CGG	-	-	1																																																																																															1
GCC	-	-	1																																																																																															1
GCG	-	-	1																																																																																															1
GCGCG	1																																																																																																	1
GCGGC	1																																																																																																	1
TGCGC	1																																																																																																	1
CAACCA	1																																																																																																	1
CTGGCG	1																																																																																																	1
GAAGTC	1																																																																																																	1
GCGGAG	1																																																																																																	1
GCTGGC	1																																																																																																	1
TCAGTA	1																																																																																																	1
TTTTTA	1																																																																																																	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																																																		1																														1	2
CG/CG	-	-	-	5	1	1																																																																																												7
AGC/CTG	-	-	1																																																																																															1
CCG/CGG	-	-	4																																																																																															4
AGCGC/CGCTG	1																																																																																																	1
CCGCG/CGCGG	2																																																																																																	2
AAAAAT/ATTTTT	1																																																																																																	1
AACCAC/GGTTGT	1																																																																																																	1
AAGTCG/ACTTCG	1																																																																																																	1
ACTGAT/AGTATC	1																																																																																																	1
AGCGCC/CGCTGG	2																																																																																																	2
AGGCGG/CCGCCT	1																																																																																																	1
