Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-125/megassr/results/hub_GCF_002266135.1/fasta/hub_GCF_002266135.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              46
Total size of examined sequences (bp):           4658074
Total number of identified SSRs:                 26
Number of SSR containing sequences:              14
Number of sequences containing more than 1 SSR:  9
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	7
3	8
5	5
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	total
AT	-	-	-	1				1
CG	-	-	-	4				4
GC	-	-	-	2				2
CGC	-	-	1					1
CGG	-	-	2	1				3
CTG	-	-					1	1
GCC	-	-	1					1
GCG	-	-	1					1
GCT	-	-	1					1
CGCCG	1							1
CGCGC	2							2
GGCGC	1							1
TGCGC	1							1
CACGAC							1	1
CGACTT	1							1
CTCCGC	1							1
CTGGCG	1							1
GCTGGC	1							1
TGGTTG	1							1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	total
AT/AT	-	-	-	1				1
CG/CG	-	-	-	6				6
AGC/CTG	-	-	1				1	2
CCG/CGG	-	-	5	1				6
AGCGC/CGCTG	1							1
CCGCG/CGCGG	4							4
AACCAC/GGTTGT	1							1
AAGTCG/ACTTCG	1							1
ACCACG/CGTGGT							1	1
AGCGCC/CGCTGG	2							2
AGGCGG/CCGCCT	1							1
