Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-124/megassr/results/hub_GCF_002266125.1/fasta/hub_GCF_002266125.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              31
Total size of examined sequences (bp):           4694335
Total number of identified SSRs:                 26
Number of SSR containing sequences:              12
Number of sequences containing more than 1 SSR:  9
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	11
4	2
5	3
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
CG	-	-	-	2						2
GC	-	-	-	3						3
AGC	-	-	1							1
CCG	-	-	2							2
CGC	-	-	1							1
CGG	-	-	2	1						3
CTG	-	-							1	1
GCC	-	-	1							1
GCG	-	-	2							2
GCCA	-	1								1
TATT	-	1								1
CGCGC	1									1
GGCGC	1									1
TGCGC	1									1
AAATAC			1							1
CGACTT	1									1
GCCAGC	1									1
GCTGGC	1									1
TGGTCG							1			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
CG/CG	-	-	-	5						5
AGC/CTG	-	-	1						1	2
CCG/CGG	-	-	8	1						9
AAAT/ATTT	-	1								1
AGCC/CTGG	-	1								1
AGCGC/CGCTG	1									1
CCGCG/CGCGG	2									2
AAATAC/ATTTGT			1							1
AAGTCG/ACTTCG	1									1
ACCACG/CGTGGT							1			1
AGCGCC/CGCTGG	2									2
