Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-148/megassr/results/hub_GCF_002266085.2/fasta/hub_GCF_002266085.2_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              2
Total size of examined sequences (bp):           4918251
Total number of identified SSRs:                 22
Number of SSR containing sequences:              2
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	7
4	1
5	3
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	total
AT	-	-	-	1												1
CG	-	-	-	1												1
GC	-	-	-	2												2
ATG	-	-	1													1
CGG	-	-	1	1												2
GCC	-	-	1													1
GCG	-	-	2													2
GCT	-	-	1													1
GCCA	-	1														1
GCGCA	1															1
GCGCC	1															1
GCGCG	1															1
CTCTGA	1															1
CTGGCG	1															1
GAAGTC	1															1
GAGATT		1														1
GCCAGC	1															1
GGCGGT	1															1
TGGTCG															1	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	total
AT/AT	-	-	-	1												1
CG/CG	-	-	-	3												3
AGC/CTG	-	-	1													1
ATC/ATG	-	-	1													1
CCG/CGG	-	-	4	1												5
AGCC/CTGG	-	1														1
AGCGC/CGCTG	1															1
CCGCG/CGCGG	2															2
AAGTCG/ACTTCG	1															1
AATCTC/AGATTG		1														1
ACCACG/CGTGGT															1	1
ACCGCC/CGGTGG	1															1
ACTCTG/AGAGTC	1															1
AGCGCC/CGCTGG	2															2
