Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-122/megassr/results/hub_GCF_002266055.1/fasta/hub_GCF_002266055.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              36
Total size of examined sequences (bp):           4729809
Total number of identified SSRs:                 23
Number of SSR containing sequences:              11
Number of sequences containing more than 1 SSR:  7
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	6
3	8
4	1
5	2
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
CG	-	-	-	3							3
GC	-	-	-	2							2
TA	-	-	-	1							1
CCG	-	-	1	1							2
CTG	-	-								1	1
GCC	-	-	1								1
GCG	-	-	3								3
GCT	-	-	1								1
GCCA	-	1									1
CGCGC	1										1
GGCGC	1										1
ATGGTC							1				1
CCGGCA	1										1
CGACTT	1										1
CGCCAG	1										1
GCATTT		1									1
GCCAGC	1										1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
AT/AT	-	-	-	1							1
CG/CG	-	-	-	5							5
AGC/CTG	-	-	1							1	2
CCG/CGG	-	-	5	1							6
AGCC/CTGG	-	1									1
CCGCG/CGCGG	2										2
AAATGC/ATTTGC		1									1
AAGTCG/ACTTCG	1										1
ACCATG/ATGGTC							1				1
ACCGGC/CCGGTG	1										1
AGCGCC/CGCTGG	2										2
