Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-121/megassr/results/hub_GCF_002266045.1/fasta/hub_GCF_002266045.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              26
Total size of examined sequences (bp):           4667942
Total number of identified SSRs:                 21
Number of SSR containing sequences:              11
Number of sequences containing more than 1 SSR:  7
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	6
3	7
4	1
5	2
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
CG	-	-	-	3		1				4
GC	-	-	-	2						2
AGC	-	-	1							1
CCG	-	-	1							1
CGC	-	-	1							1
CGG	-	-	1							1
CTG	-	-	1						1	2
GCC	-	-	1							1
GCCA	-	1								1
CGCGC	1									1
GGCGC	1									1
CACGAC								1		1
CGACTT	1									1
CGCCAG	1									1
GCCGAT	1									1
GGTCAT	1									1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
CG/CG	-	-	-	5		1				6
AGC/CTG	-	-	2						1	3
CCG/CGG	-	-	4							4
AGCC/CTGG	-	1								1
CCGCG/CGCGG	2									2
AAGTCG/ACTTCG	1									1
ACCACG/CGTGGT								1		1
ACCATG/ATGGTC	1									1
AGCGCC/CGCTGG	1									1
ATCGGC/ATGCCG	1									1
