Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-120/megassr/results/hub_GCF_002265995.1/fasta/hub_GCF_002265995.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              42
Total size of examined sequences (bp):           4689632
Total number of identified SSRs:                 25
Number of SSR containing sequences:              16
Number of sequences containing more than 1 SSR:  8
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	9
4	1
5	3
6	9

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	total
CG	-	-	-	1				1
GC	-	-	-	2				2
AGC	-	-	1					1
CAC	-	-	1					1
CCG	-	-	2					2
CGC	-	-	1					1
CGG	-	-	2					2
CTG	-	-				1		1
GAT	-	-	1					1
GCCA	-	1						1
CCCAG			1					1
CGCGC	1							1
GGCGC	1							1
ACGATG	1							1
CACGAC			1					1
CATGAC				1				1
CGACTT	1							1
CGCCAG	1							1
GCCGGT	1							1
GCTGGC	1							1
TCCCCT	1							1
TGTATT							1	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	total
CG/CG	-	-	-	3				3
ACC/GGT	-	-	1					1
AGC/CTG	-	-	1			1		2
ATC/ATG	-	-	1					1
CCG/CGG	-	-	5					5
AGCC/CTGG	-	1						1
AGCCC/CTGGG			1					1
CCGCG/CGCGG	2							2
AAATAC/ATTTGT							1	1
AAGGGG/CCCCTT	1							1
AAGTCG/ACTTCG	1							1
ACCACG/CGTGGT			1					1
ACCATG/ATGGTC				1				1
ACCGGC/CCGGTG	1							1
ACGATG/ATCGTC	1							1
AGCGCC/CGCTGG	2							2
